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Estimating missing value in microarray data using fuzzy clustering and gene ontology

Mohammadi, A and Saraee, M 2008, Estimating missing value in microarray data using fuzzy clustering and gene ontology , in: IEEE International Conference on Bioinformatics and Biomedicine, 2008. BIBM '08., November 7-9, 2008., Philadelphia, PA, USA, .

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    Abstract

    Microarray experiments usually generate data sets with multiple missing expression values, due to several problems. In this paper, a new and robust method based on fuzzy clustering and gene ontology is proposed to estimate missing values in microarray data. In the proposed method, missing values are imputed with values generated from cluster centers. To determine the similar genes in clustering process, we have utilized the biological knowledge obtained from gene ontology as well as gene expression values. We have applied the proposed method on yeast cell cycle data with different percentage of missing entries. We compared the estimation accuracy of our method with some other methods. The experimental results indicate that the proposed method outperforms other methods in terms of accuracy.

    Item Type: Conference or Workshop Item (Paper)
    Themes: Health and Wellbeing
    Schools: Colleges and Schools > College of Science & Technology > School of Computing, Science and Engineering > Data Mining and Pattern Recognition Research Centre
    Publisher: IEEE
    Refereed: Yes
    Depositing User: Dr Mo Saraee
    Date Deposited: 03 Nov 2011 15:58
    Last Modified: 20 Aug 2013 18:17
    URI: http://usir.salford.ac.uk/id/eprint/18831

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